Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20291513_20291859_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20291513 - 20291859

Intron Length:

347

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGAGTGCC

5'SS Class:

major

3'SS Sequence:

TGCTGCTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

TGCTGCTTCACA

Flanking Amino Acid:

FVIKVLVNDRLRPNAEQTLE

Intron Amino Acid Position:

1881

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.5

0.46

1.1

62.6

36.1

Major BPS

0.5

1.1

71.2

35.2

Major PPT

74.6

0.55

0.9

67.9

37.7

Minor 5ss

31.4

-2.1

3.2

45.9

42.3

Minor BPS

52.5

0.07

2.2

67.6

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027821

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034203

20265730 - 20297272

31543