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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20291903_20291996_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20291903 - 20291996
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAT
U12 Branch Point Sequence:
GTCCGTGTGATG
Flanking Amino Acid:
EQTLEHPWFKTLAKGKVIST
Intron Amino Acid Position:
1896

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
63.5
0.34
1.4
57.1
49.4
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
37.7
-1.1
2.2
39.55
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027821
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034203
20265730 - 20297272
31543