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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20294405_20294491_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20294405 - 20294491
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CTCGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
CCCTCCTGAGCC
Flanking Amino Acid:
GSTRSSASNKGEGQKRSRWE
Intron Amino Acid Position:
2667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
71.8
0.49
0.8
65.4
30.5
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
51
0.01
1.8
58.78
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027821
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034203
20265730 - 20297272
31543