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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20295807_20295933_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20295807 - 20295933
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
TCCTGGCTCACG
Flanking Amino Acid:
PSGKVHLEAADSRAAPAKDV
Intron Amino Acid Position:
2907

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
78.5
0.64
0.7
73.3
24.9
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
34.9
-1.3
2.7
42.94
48.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027821
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034203
20265730 - 20297272
31543