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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20309922_20309993_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20309922 - 20309993
Intron Length:
72

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
ATTTCCTGAGCT
Flanking Amino Acid:
PTASIDSTAVLGPNVSIGEG
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
72.5
0.51
0.8
65.9
30.2
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
69.7
0.7
1.7
87.92
36.8

Associated Gene:

Gene:
GMPPA
Ensembl Gene ID:
ENSAPLG00000023767
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045820
20307273 - 20311114
3842
ENSAPLT00000037898
20307273 - 20310506
3234