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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20310087_20310184_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20310087 - 20310184
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
GCCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CACCCCATCACC
Flanking Amino Acid:
SIVLHGAALHDHTCVLNTIV
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.7
44.5
Major BPS
72.7
0.56
1
75
30.1
Major PPT
64.2
0.32
0.8
53.7
31
Minor 5ss
36.5
-1.5
2.7
41.8
38.1
Minor BPS
45.8
-0.3
2
53.82
43.6

Associated Gene:

Gene:
GMPPA
Ensembl Gene ID:
ENSAPLG00000023767
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045820
20307273 - 20311114
3842