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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20310354_20310437_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20310354 - 20310437
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
GCTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CCCCTCTTATCG
Flanking Amino Acid:
GRLTPSITILGCSVTIPAEV
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
69.3
0.43
0.9
62
34.8
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
48
-0.2
1.7
47.48
46

Associated Gene:

Gene:
GMPPA
Ensembl Gene ID:
ENSAPLG00000023767
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045820
20307273 - 20311114
3842