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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20312131_20312207_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20312131 - 20312207
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TCCTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
TGCTCCTGACTC
Flanking Amino Acid:
RSCVGTAPRPPKVGRFFPSP
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
66.2
39.6
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
77
0.61
0.7
69
31.5
Minor 5ss
31.7
-2.1
3.3
46.2
42.2
Minor BPS
53.5
0.09
1.8
63.76
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023193
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036116
20311097 - 20316038
4942