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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20312951_20313026_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20312951 - 20313026
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
GCTGCCACCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAAAAC
U12 Branch Point Sequence:
TCGGCTAAAACC
Flanking Amino Acid:
SLHPAFLRAADIPDETACST
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
54.4
44.7
Major BPS
49.3
-0
1.1
57
34.5
Major PPT
63.1
0.29
0.9
55
35
Minor 5ss
30.8
-2.2
3.3
38.2
46.7
Minor BPS
45
-0.4
2
54.14
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023193
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036116
20311097 - 20316038
4942