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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20313229_20313307_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20313229 - 20313307
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGAC
5'SS Class:
major
3'SS Sequence:
TCTGCGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
TGCTCCCCACGG
Flanking Amino Acid:
TEVETRGLAEAGLYRVPGAE
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
67.4
38.4
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
68.1
0.41
0.9
58
38.5
Minor 5ss
28.1
-2.5
3.7
39.6
46.7
Minor BPS
38.9
-0.9
2.2
44.84
46.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023193
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036116
20311097 - 20316038
4942