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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20314956_20315062_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20314956 - 20315062
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCACAT
U12 Branch Point Sequence:
GCCCCCAGCACC
Flanking Amino Acid:
ISYDRTEDDVDIEVTVARAL
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
74.8
35.1
Major BPS
52.8
0.07
1.1
60.5
36.2
Major PPT
78.6
0.64
0.8
69
37.1
Minor 5ss
32.7
-2
3.1
39.8
40.4
Minor BPS
40.7
-0.7
2
46.45
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023193
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036116
20311097 - 20316038
4942