Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20315142_20315292_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20315142 - 20315292

Intron Length:

151

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGAA

5'SS Class:

strong_major

3'SS Sequence:

GCTCTTCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAG

U12 Branch Point Sequence:

TTGTGCTGAGCC

Flanking Amino Acid:

RLGAALAPGRRSSAVDDSCQ

Intron Amino Acid Position:

129

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

73.7

32.5

Major BPS

52.2

0.06

1.6

51.1

46.3

Major PPT

75.1

0.56

0.8

69.2

31.4

Minor 5ss

30.2

-2.3

3.3

37.1

47.5

Minor BPS

49.3

-0

2.1

67.23

44.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023193

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036116

20311097 - 20316038

4942