About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20337762_20353321_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20337762 - 20353321
Intron Length:
15560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CCTTCCCCATCC
Flanking Amino Acid:
ENCSSRDFTVVYTRYGKCYT
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
74.5
0.55
0.8
65.8
34.8
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
45.9
-0.3
2.1
59.12
45.7

Associated Gene:

Gene:
ASIC4
Ensembl Gene ID:
ENSAPLG00000020592
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042794
20336627 - 20357327
20701