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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20353467_20353556_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20353467 - 20353556
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CCATCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
CTGCCCACACCC
Flanking Amino Acid:
EEYLPIWRETNETSFEAGIR
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
57.2
42.1
Major BPS
65
0.37
1.3
76.1
38
Major PPT
73
0.52
0.8
65.9
29.9
Minor 5ss
28.8
-2.4
3.1
36.7
41.6
Minor BPS
42.8
-0.5
2
52.99
44.2

Associated Gene:

Gene:
ASIC4
Ensembl Gene ID:
ENSAPLG00000020592
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042794
20336627 - 20357327
20701