Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20358849_20359062_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20358849 - 20359062

Intron Length:

214

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCACG

5'SS Class:

strong_major

3'SS Sequence:

GCTGTCGCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAC

U12 Branch Point Sequence:

CCATACTCACCC

Flanking Amino Acid:

HGGLSCGAPESPAASRSTIG

Intron Amino Acid Position:

247

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

71.4

40.3

Major BPS

77.2

0.68

0.8

77.6

26.2

Major PPT

64.3

0.32

41.5

Minor 5ss

34.3

-1.8

2.8

40.4

45.5

Minor BPS

44.9

-0.4

52.21

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026521

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043611

20358108 - 20360372

2265