Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20377211_20377346_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20377211 - 20377346

Intron Length:

136

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCCACAT

5'SS Class:

major

3'SS Sequence:

CCACCCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTTAC

U12 Branch Point Sequence:

CCCTGCTTACTG

Flanking Amino Acid:

VSSTVKIRQEGPRHFLLLCA

Intron Amino Acid Position:

2135

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.6

0.32

1.2

58.8

Major BPS

66.4

0.41

1.1

57.4

41.4

Major PPT

0.34

0.8

57.7

26.5

Minor 5ss

32.7

-2

3.4

47.5

47.9

Minor BPS

45.2

-0.5

2.1

45.75

47.6

Associated Gene:

Gene:

OBSL1

Ensembl Gene ID:

ENSAPLG00000020759

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037623

20377097 - 20390177

13081