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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20377741_20377866_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20377741 - 20377866
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
GACCCCTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
GACCCCTTGACC
Flanking Amino Acid:
RPTAEVKWLKDGRELRPGPH
Intron Amino Acid Position:
2030

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
62.6
0.28
1
56.6
38.5
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
65.4
0.47
1.3
65.37
40

Associated Gene:

Gene:
OBSL1
Ensembl Gene ID:
ENSAPLG00000020759
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037623
20377097 - 20390177
13081