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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20379312_20379399_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20379312 - 20379399
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
ACCCCCGCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CCCGCCCTGACA
Flanking Amino Acid:
DRTLATLTVQVPRVVEIIAE
Intron Amino Acid Position:
1724

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.8
40.2
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
65.7
0.35
0.9
57.7
32.5
Minor 5ss
34.8
-1.7
2.8
36.3
40.5
Minor BPS
48
-0.1
1.8
54.49
44.6

Associated Gene:

Gene:
OBSL1
Ensembl Gene ID:
ENSAPLG00000020759
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037623
20377097 - 20390177
13081