About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20379667_20379742_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20379667 - 20379742
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
CTCGGCTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCCTGCTGATGC
Flanking Amino Acid:
DKMQFDVSVRELQVKFLRGL
Intron Amino Acid Position:
1635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
72.2
39.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
67.4
0.39
1
60.7
40.2
Minor 5ss
38.1
-1.3
3
43.8
43.8
Minor BPS
41
-0.7
2.2
50.27
46.5

Associated Gene:

Gene:
OBSL1
Ensembl Gene ID:
ENSAPLG00000020759
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037623
20377097 - 20390177
13081