Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20381749_20381961_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

20381749 - 20381961

Intron Length:

213

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGCGAG

5'SS Class:

major

3'SS Sequence:

AGCGGTGCCACAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGTTAAT

U12 Branch Point Sequence:

CCGTGGTTAATG

Flanking Amino Acid:

DTVTFTIQVSDPPVRILERD

Intron Amino Acid Position:

1265

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

59.7

41.3

Major BPS

66.6

0.41

1.4

69.7

44.2

Major PPT

54.9

0.11

45.5

Minor 5ss

30.7

-2.2

3.3

38.1

46.8

Minor BPS

43.4

-0.6

2.4

45.86

47.5

Associated Gene:

Gene:

OBSL1

Ensembl Gene ID:

ENSAPLG00000020759

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037623

20377097 - 20390177

13081