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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20383085_20383163_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20383085 - 20383163
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
TGTCCCTGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
TGTCCCCGCACT
Flanking Amino Acid:
DAASFRVTVIEAPVRIVSSN
Intron Amino Acid Position:
990

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.5
41.4
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
64.9
0.34
1.1
61.5
40
Minor 5ss
39.2
-1.2
3
50.7
46
Minor BPS
46.9
-0.1
2.2
72.5
43.5

Associated Gene:

Gene:
OBSL1
Ensembl Gene ID:
ENSAPLG00000020759
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037623
20377097 - 20390177
13081