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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20383440_20386170_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20383440 - 20386170
Intron Length:
2731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
TTGGTTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCAAT
U12 Branch Point Sequence:
CCAGCCCCAATC
Flanking Amino Acid:
DSVFYTITVAAPPARIAPVP
Intron Amino Acid Position:
898

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
48.8
-0
1.3
56.3
37.4
Major PPT
74.5
0.55
0.9
66.2
40.8
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
43.4
-0.5
1.9
47.72
42.2

Associated Gene:

Gene:
OBSL1
Ensembl Gene ID:
ENSAPLG00000020759
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037623
20377097 - 20390177
13081