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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20388179_20388279_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20388179 - 20388279
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
GCATCCTCACAC
Flanking Amino Acid:
GRSIAEVSVRGVIVKRLPRK
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.1
81.3
32.8
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
83.7
0.76
0.7
76.5
32.2
Minor 5ss
38.7
-1.3
3.4
57.8
46.8
Minor BPS
46.4
-0.2
1.9
53.75
43.4

Associated Gene:

Gene:
OBSL1
Ensembl Gene ID:
ENSAPLG00000020759
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037623
20377097 - 20390177
13081