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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20392247_20392816_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20392247 - 20392816
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
GCACCCTGAGCC
Flanking Amino Acid:
TSQVILFPSTDVPCEPMQPD
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
71.4
40.3
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
78.6
0.64
0.7
72.6
25.7
Minor 5ss
35.1
-1.7
3.1
48.4
47.3
Minor BPS
48.1
-0.1
1.7
55.02
42.2

Associated Gene:

Gene:
INHA
Ensembl Gene ID:
ENSAPLG00000028805
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033015
20391988 - 20393550
1563