Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20408609_20409050_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20408609 - 20409050

Intron Length:

442

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

GTATCTCCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTGTAT

U12 Branch Point Sequence:

TCTTCCTTCAGT

Flanking Amino Acid:

TVEMNPQHWLWPLLDSKTTG

Intron Amino Acid Position:

1060

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

70.5

33.4

Major BPS

53.8

0.09

1.6

57.4

49.1

Major PPT

0.59

0.9

66.6

40.4

Minor 5ss

30.9

-2.2

3.3

36.6

41.5

Minor BPS

64.5

0.54

2.1

83.33

44.1

Associated Gene:

Gene:

STK11IP

Ensembl Gene ID:

ENSAPLG00000003429

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003552

20407991 - 20427634

19644