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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20409556_20409741_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20409556 - 20409741
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
CCTGCTGCAGCT
Flanking Amino Acid:
IYVLEVTGVIRGQPAEWLKK
Intron Amino Acid Position:
972

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
63
0.29
1
61
40.2
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
39.1
-0.7
2.3
54.98
47.4

Associated Gene:

Gene:
STK11IP
Ensembl Gene ID:
ENSAPLG00000003429
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003552
20407991 - 20427634
19644