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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20414657_20414835_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20414657 - 20414835
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TGTGTATTGACT
Flanking Amino Acid:
LGEEEDEKPEVDLCQPVLVS
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
69.5
41.5
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
79
0.65
1
76.3
37.7
Minor 5ss
31.4
-2.1
3.2
40.6
45.6
Minor BPS
57.2
0.31
1.7
76.61
39.9

Associated Gene:

Gene:
STK11IP
Ensembl Gene ID:
ENSAPLG00000003429
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003552
20407991 - 20427634
19644