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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20422980_20423883_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20422980 - 20423883
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TCTCTCTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTGAT
U12 Branch Point Sequence:
TCTCTCTAAACA
Flanking Amino Acid:
KVQDCELYLTTLTELEYLNL
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
63.5
0.33
1.4
57.1
49.4
Major PPT
73.4
0.53
0.9
69.9
34.3
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
62.5
0.39
1.7
72.02
40.3

Associated Gene:

Gene:
STK11IP
Ensembl Gene ID:
ENSAPLG00000003429
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003552
20407991 - 20427634
19644