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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20425691_20427130_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20425691 - 20427130
Intron Length:
1440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGCCC
5'SS Class:
major
3'SS Sequence:
CTGATTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTTTTCTGATTT
Flanking Amino Acid:
DVLQKTRSLKLIHVPNCVLQ
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
57.6
41.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
76.8
0.6
0.9
69.3
41.6
Minor 5ss
25.5
-2.8
3.2
33.6
41.9
Minor BPS
57
0.3
1.7
75.98
41.3

Associated Gene:

Gene:
STK11IP
Ensembl Gene ID:
ENSAPLG00000003429
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003552
20407991 - 20427634
19644