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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20434490_20437502_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20434490 - 20437502
Intron Length:
3013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTACGTAGG
5'SS Class:
major
3'SS Sequence:
TTTTCTCTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CTGCCCCTGACT
Flanking Amino Acid:
RRSYSERDFEFHRQTSHHIH
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
65.8
45.4
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
89.6
0.89
0.6
88.7
20.5
Minor 5ss
36.5
-1.5
3
46.3
42.3
Minor BPS
57.1
0.3
1.8
73.63
43.2

Associated Gene:

Gene:
SLC4A3
Ensembl Gene ID:
ENSAPLG00000003772
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003919
20432792 - 20461201
28410