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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20444894_20445552_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20444894 - 20445552
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCCATG
5'SS Class:
weak_major
3'SS Sequence:
TAATCCCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
CTTGCTGTAATC
Flanking Amino Acid:
KKKLDRKPHEVFVELNELVV
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
65.3
46
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
66.5
0.37
1
59
42.4
Minor 5ss
66.2
0.55
2
74.6
41.7
Minor BPS
50.1
-0
2.1
65.01
41.9

Associated Gene:

Gene:
SLC4A3
Ensembl Gene ID:
ENSAPLG00000003772
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003919
20432792 - 20461201
28410