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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20447645_20449434_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20447645 - 20449434
Intron Length:
1790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGGC
5'SS Class:
major
3'SS Sequence:
TGCCTCCCGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
CAATGATTAACT
Flanking Amino Acid:
EDAEATVVLVGCVQFLEQPT
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.2
40.9
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
66.5
0.37
1
62
34.8
Minor 5ss
30.3
-2.3
3.3
33.5
42
Minor BPS
53
0.17
2.1
71.36
44.9

Associated Gene:

Gene:
SLC4A3
Ensembl Gene ID:
ENSAPLG00000003772
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003919
20432792 - 20461201
28410