About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20454577_20455054_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20454577 - 20455054
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCCAC
U12 Branch Point Sequence:
TTGCCACCGAGA
Flanking Amino Acid:
FKNSRFLGGKARRIIGDFGI
Intron Amino Acid Position:
938

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
52.3
0.06
1.4
64.2
43
Major PPT
83.2
0.75
0.9
77.3
37
Minor 5ss
26.7
-2.7
3.3
38.5
46.6
Minor BPS
37.6
-0.9
2.1
50.41
40.5

Associated Gene:

Gene:
SLC4A3
Ensembl Gene ID:
ENSAPLG00000003772
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003919
20432792 - 20461201
28410