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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20455145_20456730_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
20455145 - 20456730
Intron Length:
1586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GCTACACCACCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGATGAATAACT
Flanking Amino Acid:
DYTITDTYTQKLNVPSGLSV
Intron Amino Acid Position:
968

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1
77.2
32.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
58.9
0.2
1
48.8
39.4
Minor 5ss
32.6
-2
3.4
44.1
43.8
Minor BPS
47.7
-0.1
2.2
72.34
43.6

Associated Gene:

Gene:
SLC4A3
Ensembl Gene ID:
ENSAPLG00000003772
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003919
20432792 - 20461201
28410