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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20457554_20457855_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20457554 - 20457855
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCCTC
5'SS Class:
major
3'SS Sequence:
TCTGTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGAGAA
U12 Branch Point Sequence:
ATGCCCTGAGCT
Flanking Amino Acid:
VTGVLIAALVGLSIVMGNML
Intron Amino Acid Position:
1108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
63.5
42.9
Major BPS
48.4
-0.1
1.1
44.5
38.7
Major PPT
82.9
0.74
0.8
77.1
31.6
Minor 5ss
37.5
-1.4
3.2
51.7
45
Minor BPS
55.4
0.25
1.7
73.37
42.9

Associated Gene:

Gene:
SLC4A3
Ensembl Gene ID:
ENSAPLG00000003772
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003919
20432792 - 20461201
28410