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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20458026_20458478_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20458026 - 20458478
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TGTTCTCAGACT
Flanking Amino Acid:
HHPDHIYVVKVKTWRMNLFT
Intron Amino Acid Position:
1165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
73.7
32.5
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
74.1
0.54
0.8
66.6
35.5
Minor 5ss
30.2
-2.3
3.3
37.1
47.5
Minor BPS
50.9
0.11
2
76.55
40.2

Associated Gene:

Gene:
SLC4A3
Ensembl Gene ID:
ENSAPLG00000003772
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003919
20432792 - 20461201
28410