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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20487769_20490279_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20487769 - 20490279
Intron Length:
2511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCTTC
5'SS Class:
major
3'SS Sequence:
TTGTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CATGTCTTCATT
Flanking Amino Acid:
THVEEAILESSPILEAFGNA
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
0.9
71
35.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.6
0.82
0.8
81.4
30.6
Minor 5ss
49.1
-0.1
2.7
66.9
44.7
Minor BPS
50.3
0.09
1.9
67.77
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004566
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004797
20478871 - 20545739
66869