About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20492136_20493791_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20492136 - 20493791
Intron Length:
1656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTGTCTTTCCCT
Flanking Amino Acid:
LLAGVSGEMKESLSLSEPET
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
80.2
30.6
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
81.1
0.7
0.8
75.7
32.7
Minor 5ss
45.1
-0.5
2.6
58.1
46.5
Minor BPS
45
-0.3
3.6
79.01
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004566
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004797
20478871 - 20545739
66869