Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20493896_20494657_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20493896 - 20494657

Intron Length:

762

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

TGGTTTTGCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTGTAT

U12 Branch Point Sequence:

TGGTTTTGCACA

Flanking Amino Acid:

NDIEMFSKVMTAMKVVDFST

Intron Amino Acid Position:

286

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

73.2

37.4

Major BPS

56.3

0.16

1.5

57.4

49.1

Major PPT

72.6

0.51

68.1

42.3

Minor 5ss

31.6

-2.1

2.9

39.6

39.8

Minor BPS

47.4

-0.2

1.9

60.02

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004566

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004797

20478871 - 20545739

66869