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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20499307_20501875_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20499307 - 20501875
Intron Length:
2569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCCCTTTCATT
Flanking Amino Acid:
LLEKLHSQHMSNHYYVKPRV
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
84
0.76
0.8
81.3
29.1
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
59.2
0.37
1.7
76.64
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004566
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004797
20478871 - 20545739
66869