Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20501945_20502783_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20501945 - 20502783

Intron Length:

839

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTGTT

5'SS Class:

strong_major

3'SS Sequence:

GTCTGTATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAC

U12 Branch Point Sequence:

TCTGTCTGTATT

Flanking Amino Acid:

QFGIRHYAGEVLYDVRGFLE

Intron Amino Acid Position:

502

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

85.2

32.2

Major BPS

61.6

0.29

1.4

63.4

Major PPT

76.4

0.59

0.9

69.7

40.3

Minor 5ss

37.2

-1.4

3.6

57.3

47.4

Minor BPS

-0

1.9

67.51

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004566

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004797

20478871 - 20545739

66869