About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20502867_20504391_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20502867 - 20504391
Intron Length:
1525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTATG
5'SS Class:
strong_major
3'SS Sequence:
TATTTACCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTTCTTTAATT
Flanking Amino Acid:
DDILNMLKDSRLDFIYDLFE
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
73.7
0.53
0.8
71.6
34.1
Minor 5ss
40
-1.1
2.7
50.1
46.4
Minor BPS
84.4
1.16
1
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004566
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004797
20478871 - 20545739
66869