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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20505591_20506605_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20505591 - 20506605
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GCTCATAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTTTTTGAATC
Flanking Amino Acid:
IRCIKPNTEKAPNLFNPDVV
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.7
91.8
25.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
66.1
0.36
1
59
40.6
Minor 5ss
29.8
-2.3
4.1
49.5
46.7
Minor BPS
64
0.42
1.3
71.32
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004566
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004797
20478871 - 20545739
66869