Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20530201_20531705_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20530201 - 20531705

Intron Length:

1505

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTATA

5'SS Class:

strong_major

3'SS Sequence:

TACTTTCTGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

ATGCTTTTACTT

Flanking Amino Acid:

DSVCASDNPDRPNSFVIITA

Intron Amino Acid Position:

1239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.9

0.96

0.8

88.8

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

76.1

0.59

73.1

36.9

Minor 5ss

45.4

-0.5

2.5

59.5

45.1

Minor BPS

51.3

0.12

1.6

66.58

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004566

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004797

20478871 - 20545739

66869