Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20535190_20536385_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20535190 - 20536385

Intron Length:

1196

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAGGTACC

5'SS Class:

major

3'SS Sequence:

TTGTTTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTCAT

U12 Branch Point Sequence:

CTCTCCTCATTT

Flanking Amino Acid:

PTQQLIRDIRENSTNFEVVE

Intron Amino Acid Position:

1405

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.1

70.2

38.5

Major BPS

82.3

0.8

0.9

81.8

30.8

Major PPT

91.2

0.93

0.7

84.6

Minor 5ss

35.2

-1.7

2.9

39.8

Minor BPS

54.3

0.21

1.9

71.65

45.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000004566

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004797

20478871 - 20545739

66869