About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20538305_20539341_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20538305 - 20539341
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTACAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTCTCTTTACAA
Flanking Amino Acid:
ILRYLKFHLRRVKDLFPGSE
Intron Amino Acid Position:
1545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
33.7
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
68.4
0.41
1
68.6
36.5
Minor 5ss
31
-2.2
3.4
42.5
44.5
Minor BPS
61.1
0.34
1.7
71.99
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004566
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004797
20478871 - 20545739
66869