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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20539550_20539955_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20539550 - 20539955
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGCAT
5'SS Class:
major
3'SS Sequence:
CTGATTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGTCTCTGATTT
Flanking Amino Acid:
TINSHTSAGEVVEKLIRGLA
Intron Amino Acid Position:
1615

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
69.6
42.7
Major BPS
79
0.72
1
69
38.9
Major PPT
81.8
0.72
0.9
76.4
37.5
Minor 5ss
38
-1.4
3.4
55.8
48.4
Minor BPS
50.5
0.1
1.7
70.88
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004566
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004797
20478871 - 20545739
66869