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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20541663_20543196_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20541663 - 20543196
Intron Length:
1534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTTTTTGTTT
Flanking Amino Acid:
GVEFAFMFEQAHESLIDGHF
Intron Amino Acid Position:
1702

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.9
0.72
0.8
77.2
37.1
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004566
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004797
20478871 - 20545739
66869