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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20543647_20544374_F

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20543647 - 20544374
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
CTGCATTTAAGC
Flanking Amino Acid:
GYGSTLFDVECKEGGFPNDL
Intron Amino Acid Position:
1852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
85.6
0.8
0.8
80.7
31.4
Minor 5ss
26.7
-2.7
3.3
37.5
47.2
Minor BPS
47.9
-0.1
1.8
56.14
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004566
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004797
20478871 - 20545739
66869