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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_20555785_20556246_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20555785 - 20556246
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
TTTTTCTCAACA
Flanking Amino Acid:
VWLGLTQNSKDQSLYWLDGS
Intron Amino Acid Position:
1616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.9
41.1
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
84.9
0.79
0.8
81.9
28.6
Minor 5ss
33.4
-1.9
2.9
35.8
40.7
Minor BPS
78.1
0.88
1.4
87.43
30.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005546
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005854
20553853 - 20598781
44929